HL_5DM8_041

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

5DM8|1|X|U|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_041 not in the Motif Atlas

Geometric match to HL_7RQB_041

Geometric discrepancy: 0.2923

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

5DM8|1|X|U|1630
5DM8|1|X|C|1631
5DM8|1|X|A|1632
5DM8|1|X|A|1633
5DM8|1|X|U|1634
5DM8|1|X|G|1635

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains