HL_5DM8_043

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5DM8|1|X|U|1735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_043 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3179

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5DM8|1|X|C|1734
5DM8|1|X|U|1735
5DM8|1|X|U|1736
5DM8|1|X|C|1737
5DM8|1|X|G|1738

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains