HL_5DM8_045
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUUACCAAAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5DM8|1|X|A|1780, 5DM8|1|X|C|1781, 5DM8|1|X|C|1782, 5DM8|1|X|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM8_045 not in the Motif Atlas
- Geometric match to HL_7A0S_045
- Geometric discrepancy: 0.1191
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5DM8|1|X|G|1776
5DM8|1|X|U|1777
5DM8|1|X|U|1778
5DM8|1|X|U|1779
5DM8|1|X|A|1780
5DM8|1|X|C|1781
5DM8|1|X|C|1782
5DM8|1|X|A|1783
5DM8|1|X|A|1784
5DM8|1|X|A|1785
5DM8|1|X|A|1786
5DM8|1|X|U|1787
5DM8|1|X|C|1788
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
Coloring options: