HL_5DM8_054

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5DM8|1|X|A|2268, 5DM8|1|X|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_054 not in the Motif Atlas

Geometric match to HL_7A0S_053

Geometric discrepancy: 0.0918

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5DM8|1|X|C|2264
5DM8|1|X|C|2265
5DM8|1|X|A|2266
5DM8|1|X|A|2267
5DM8|1|X|A|2268
5DM8|1|X|A|2269
5DM8|1|X|U|2270
5DM8|1|X|G|2271
5DM8|1|X|U|2272
5DM8|1|X|A|2273
5DM8|1|X|A|2274
5DM8|1|X|C|2275
5DM8|1|X|G|2276

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27