3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DOX_033 not in the Motif Atlas
Homologous match to HL_7RQB_033
Geometric discrepancy: 0.0542
The information below is about HL_7RQB_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

5DOX|1|1A|G|1281
5DOX|1|1A|U|1282
5DOX|1|1A|G|1283
5DOX|1|1A|A|1284
5DOX|1|1A|G|1285
5DOX|1|1A|A|1286
5DOX|1|1A|A|1287
5DOX|1|1A|U|1288
5DOX|1|1A|C|1289

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1R
50S ribosomal protein L17
Chain 1W
50S ribosomal protein L22

Coloring options:


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