HL_5DOX_041

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

5DOX|1|1A|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_041 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.1091

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

5DOX|1|1A|C|1631
5DOX|1|1A|A|1631|||A
5DOX|1|1A|A|1632
5DOX|1|1A|G|1633
5DOX|1|1A|A|1634
5DOX|1|1A|G|1635

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains