HL_5DOX_051
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5DOX|1|1A|A|2030, 5DOX|1|1A|A|2031, 5DOX|1|1A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOX_051 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0637
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5DOX|1|1A|G|2027
5DOX|1|1A|U|2028
5DOX|1|1A|G|2029
5DOX|1|1A|A|2030
5DOX|1|1A|A|2031
5DOX|1|1A|G|2032
5DOX|1|1A|A|2033
5DOX|1|1A|U|2034
5DOX|1|1A|G|2035
5DOX|1|1A|C|2036
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1V
- 50S ribosomal protein L21
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