HL_5DOX_055

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5DOX|1|1A|A|2268, 5DOX|1|1A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_055 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0558

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5DOX|1|1A|C|2264
5DOX|1|1A|U|2265
5DOX|1|1A|A|2266
5DOX|1|1A|A|2267
5DOX|1|1A|A|2268
5DOX|1|1A|A|2269
5DOX|1|1A|G|2270
5DOX|1|1A|G|2271
5DOX|1|1A|U|2272
5DOX|1|1A|A|2273
5DOX|1|1A|A|2274
5DOX|1|1A|C|2275
5DOX|1|1A|G|2276

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25