HL_5DOX_078
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGUAAUGGCC
- Length
- 11 nucleotides
- Bulged bases
- 5DOX|1|1a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOX_078 not in the Motif Atlas
- Geometric match to HL_8GLP_091
- Geometric discrepancy: 0.2161
- The information below is about HL_8GLP_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DOX|1|1a|G|258
5DOX|1|1a|G|259
5DOX|1|1a|G|260
5DOX|1|1a|U|261
5DOX|1|1a|A|262
5DOX|1|1a|A|263
5DOX|1|1a|U|264
5DOX|1|1a|G|265
5DOX|1|1a|G|266
5DOX|1|1a|C|267
5DOX|1|1a|C|268
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1q
- 30S ribosomal protein S17
- Chain 1t
- 30S ribosomal protein S20
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