HL_5DOX_204

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

5DOX|1|2a|C|1267, 5DOX|1|2a|A|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_204 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.2326

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5DOX|1|2a|G|1265
5DOX|1|2a|G|1266
5DOX|1|2a|C|1267
5DOX|1|2a|A|1268
5DOX|1|2a|A|1269
5DOX|1|2a|C|1270

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2s

30S ribosomal protein S19

Chain 2u

30S ribosomal protein Thx