HL_5DOY_010

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5DOY|1|1A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_010 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.043

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5DOY|1|1A|U|305
5DOY|1|1A|U|306
5DOY|1|1A|G|307
5DOY|1|1A|G|308
5DOY|1|1A|G|309
5DOY|1|1A|A|310
5DOY|1|1A|A|311
5DOY|1|1A|G|312

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Y

50S Ribosomal Protein L24