HL_5DOY_054
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5DOY|1|1A|A|2268, 5DOY|1|1A|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOY_054 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0612
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DOY|1|1A|C|2264
5DOY|1|1A|U|2265
5DOY|1|1A|A|2266
5DOY|1|1A|A|2267
5DOY|1|1A|A|2268
5DOY|1|1A|A|2269
5DOY|1|1A|G|2270
5DOY|1|1A|G|2271
5DOY|1|1A|U|2272
5DOY|1|1A|A|2273
5DOY|1|1A|A|2274
5DOY|1|1A|C|2275
5DOY|1|1A|G|2276
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S Ribosomal Protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S Ribosomal Protein L16
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