HL_5DOY_092
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5DOY|1|1a|A|968, 5DOY|1|1a|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DOY_092 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0736
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DOY|1|1a|G|963
5DOY|1|1a|A|964
5DOY|1|1a|A|965
5DOY|1|1a|M2G|966
5DOY|1|1a|5MC|967
5DOY|1|1a|A|968
5DOY|1|1a|A|969
5DOY|1|1a|C|970
5DOY|1|1a|G|971
5DOY|1|1a|C|972
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S Ribosomal Protein S9
- Chain 1j
- 30S Ribosomal Protein S10
- Chain 1m
- 30S Ribosomal Protein S13
- Chain 1n
- 30S Ribosomal Protein S14
- Chain 1w
- Transfer RNA; tRNA
- Chain 1x
- Transfer RNA; tRNA
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