HL_5DOY_173

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

5DOY|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_173 not in the Motif Atlas

Geometric match to HL_2DER_005

Geometric discrepancy: 0.3365

The information below is about HL_2DER_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5DOY|1|2A|C|2527
5DOY|1|2A|U|2528
5DOY|1|2A|G|2529
5DOY|1|2A|A|2530
5DOY|1|2A|A|2531
5DOY|1|2A|G|2532
5DOY|1|2A|A|2533
5DOY|1|2A|A|2534
5DOY|1|2A|G|2535
5DOY|1|2A|G|2536

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2H

50S Ribosomal Protein L6