HL_5DOY_225

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5DOY|1|1A|C|888, 5DOY|1|1A|C|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_225 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.4975

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5DOY|1|1A|C|884
5DOY|1|1A|C|885
5DOY|1|1A|C|886
5DOY|1|1A|A|887
5DOY|1|1A|C|888
5DOY|1|1A|C|889
5DOY|1|1A|A|890
5DOY|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S Ribosomal Protein S13