3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGGGAAACUC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E7K_003 not in the Motif Atlas
Geometric match to HL_3SKL_006
Geometric discrepancy: 0.3518
The information below is about HL_3SKL_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

5E7K|1|13|G|156
5E7K|1|13|G|157
5E7K|1|13|G|158
5E7K|1|13|G|159
5E7K|1|13|A|160
5E7K|1|13|A|161
5E7K|1|13|A|162
5E7K|1|13|C|163
5E7K|1|13|U|164
5E7K|1|13|C|165

Current chains

Chain 13
16S rRNA

Nearby chains

Chain B8
50S ribosomal protein L19
Chain BI
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5754 s