HL_5E7K_174

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5E7K|1|1H|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E7K_174 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.081

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

5E7K|1|1H|C|1691
5E7K|1|1H|U|1692
5E7K|1|1H|U|1693
5E7K|1|1H|C|1694
5E7K|1|1H|G|1695
5E7K|1|1H|G|1696

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA