HL_5E81_041

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5E81|1|14|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_041 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0907

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5E81|1|14|U|305
5E81|1|14|U|306
5E81|1|14|G|307
5E81|1|14|G|308
5E81|1|14|G|309
5E81|1|14|A|310
5E81|1|14|A|311
5E81|1|14|G|312

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L24