HL_5E81_081

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5E81|1|14|A|2030, 5E81|1|14|A|2031, 5E81|1|14|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_081 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0615

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5E81|1|14|G|2027
5E81|1|14|U|2028
5E81|1|14|G|2029
5E81|1|14|A|2030
5E81|1|14|A|2031
5E81|1|14|G|2032
5E81|1|14|A|2033
5E81|1|14|U|2034
5E81|1|14|G|2035
5E81|1|14|C|2036

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3