HL_5E81_106

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5E81|1|1G|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_106 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0716

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5E81|1|1G|G|259
5E81|1|1G|G|260
5E81|1|1G|U|261
5E81|1|1G|A|262
5E81|1|1G|A|263
5E81|1|1G|U|264
5E81|1|1G|G|265
5E81|1|1G|G|266
5E81|1|1G|C|267

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 8A

30S ribosomal protein S17

Chain BA

30S ribosomal protein S20