HL_5E81_211

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

5E81|1|2K|G|19, 5E81|1|2K|G|20, 5E81|1|2K|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5E81|1|2K|C|13
5E81|1|2K|A|14
5E81|1|2K|G|15
5E81|1|2K|C|16
5E81|1|2K|C|17
5E81|1|2K|C|18
5E81|1|2K|G|19
5E81|1|2K|G|20
5E81|1|2K|U|21
5E81|1|2K|A|22
5E81|1|2K|G|23

Current chains

Chain 2K

tRNA-fMet

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 41

50S ribosomal protein L5