3D structure

PDB id
5E81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGGCAACG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E81_229 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.2331
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

5E81|1|1G|C|1264
5E81|1|1G|G|1265
5E81|1|1G|G|1266
5E81|1|1G|C|1267
5E81|1|1G|A|1268
5E81|1|1G|A|1269
5E81|1|1G|C|1270
5E81|1|1G|G|1271

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1B
30S ribosomal protein Thx
Chain 4A
30S ribosomal protein S13
Chain AA
30S ribosomal protein S19

Coloring options:


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