HL_5E81_231

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

5E81|1|1H|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_231 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5382

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5E81|1|1H|G|1091
5E81|1|1H|C|1092
5E81|1|1H|G|1093
5E81|1|1H|U|1094
5E81|1|1H|A|1095
5E81|1|1H|A|1096
5E81|1|1H|U|1097
5E81|1|1H|A|1098
5E81|1|1H|G|1099
5E81|1|1H|C|1100

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6