HL_5E81_232

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

5E81|1|1H|U|1535, 5E81|1|1H|A|1536, 5E81|1|1H|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_232 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.3338

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5E81|1|1H|C|1532
5E81|1|1H|C|1533
5E81|1|1H|G|1534
5E81|1|1H|U|1535
5E81|1|1H|A|1536
5E81|1|1H|C|1537
5E81|1|1H|G|1538
5E81|1|1H|G|1539

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains