HL_5EAO_002
3D structure
- PDB id
- 5EAO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- CUGGGAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EAO_002 not in the Motif Atlas
- Geometric match to HL_5DH6_002
- Geometric discrepancy: 0.0633
- The information below is about HL_5DH6_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_13999.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
5EAO|1|A|C|27
5EAO|1|A|U|28
5EAO|1|A|G|29
5EAO|1|A|G|30
5EAO|1|A|G|31
5EAO|1|A|A|32
5EAO|1|A|U|33
5EAO|1|A|G|34
Current chains
- Chain A
- RNA (48-MER)
Nearby chains
- Chain B
- RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3')
Coloring options: