HL_5EL4_042

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5EL4|1|14|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_042 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0857

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5EL4|1|14|U|305
5EL4|1|14|U|306
5EL4|1|14|G|307
5EL4|1|14|G|308
5EL4|1|14|G|309
5EL4|1|14|A|310
5EL4|1|14|A|311
5EL4|1|14|G|312

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L24