HL_5EL4_186

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5EL4|1|1H|A|2030, 5EL4|1|1H|A|2031, 5EL4|1|1H|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_186 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0798

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5EL4|1|1H|G|2027
5EL4|1|1H|U|2028
5EL4|1|1H|G|2029
5EL4|1|1H|A|2030
5EL4|1|1H|A|2031
5EL4|1|1H|G|2032
5EL4|1|1H|A|2033
5EL4|1|1H|U|2034
5EL4|1|1H|G|2035
5EL4|1|1H|C|2036

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3