HL_5EL4_238

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

5EL4|1|1G|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_238 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3137

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5EL4|1|1G|G|1133
5EL4|1|1G|G|1134
5EL4|1|1G|U|1135
5EL4|1|1G|U|1136
5EL4|1|1G|C|1137
5EL4|1|1G|G|1138
5EL4|1|1G|G|1139
5EL4|1|1G|C|1140
5EL4|1|1G|C|1141

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains