HL_5EL4_246
3D structure
- PDB id
- 5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UCAGUUGGUAGA
- Length
- 12 nucleotides
- Bulged bases
- 5EL4|1|3K|U|16, 5EL4|1|3K|U|17, 5EL4|1|3K|G|18, 5EL4|1|3K|G|19, 5EL4|1|3K|U|20, 5EL4|1|3K|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL4_246 not in the Motif Atlas
- Homologous match to HL_4WT8_234
- Geometric discrepancy: 0.3794
- The information below is about HL_4WT8_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96927.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5EL4|1|3K|U|12
5EL4|1|3K|C|13
5EL4|1|3K|A|14
5EL4|1|3K|G|15
5EL4|1|3K|U|16
5EL4|1|3K|U|17
5EL4|1|3K|G|18
5EL4|1|3K|G|19
5EL4|1|3K|U|20
5EL4|1|3K|A|21
5EL4|1|3K|G|22
5EL4|1|3K|A|23
Current chains
- Chain 3K
- tRNA-Lys
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 71
- 50S ribosomal protein L1
Coloring options: