HL_5EL5_009

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAGG

Length

5 nucleotides

Bulged bases

5EL5|1|13|A|344

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_009 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.3566

The information below is about HL_8VM8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5EL5|1|13|C|342
5EL5|1|13|U|343
5EL5|1|13|A|344
5EL5|1|13|G|346
5EL5|1|13|G|347

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14

Chain B8

50S ribosomal protein L19