HL_5EL5_046

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_046 not in the Motif Atlas

Homologous match to HL_5J7L_147

Geometric discrepancy: 0.063

The information below is about HL_5J7L_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5EL5|1|14|C|462
5EL5|1|14|G|463
5EL5|1|14|U|464
5EL5|1|14|G|465
5EL5|1|14|A|466
5EL5|1|14|G|467

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain L5

50S ribosomal protein L34