HL_5EL5_061

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGGAUGACCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_061 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3779

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5EL5|1|14|G|1169
5EL5|1|14|G|1170
5EL5|1|14|G|1171
5EL5|1|14|G|1173
5EL5|1|14|A|1174
5EL5|1|14|U|1175
5EL5|1|14|G|1176
5EL5|1|14|A|1177
5EL5|1|14|C|1178
5EL5|1|14|C|1179
5EL5|1|14|C|1180

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 95

50S ribosomal protein L21