3D structure

PDB id
5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UGAUGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5EL5_074 not in the Motif Atlas
Homologous match to HL_9DFE_041
Geometric discrepancy: 0.4659
The information below is about HL_9DFE_041
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

5EL5|1|14|U|1727
5EL5|1|14|G|1728
5EL5|1|14|A|1729
5EL5|1|14|U|1730
5EL5|1|14|G|1731
5EL5|1|14|A|1732
5EL5|1|14|G|1733

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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