3D structure

PDB id
5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
5EL5|1|14|A|1780, 5EL5|1|14|C|1781, 5EL5|1|14|C|1782, 5EL5|1|14|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5EL5_076 not in the Motif Atlas
Homologous match to HL_5J7L_178
Geometric discrepancy: 0.0697
The information below is about HL_5J7L_178
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

5EL5|1|14|U|1777
5EL5|1|14|U|1778
5EL5|1|14|U|1779
5EL5|1|14|A|1780
5EL5|1|14|C|1781
5EL5|1|14|C|1782
5EL5|1|14|A|1783
5EL5|1|14|A|1784
5EL5|1|14|A|1785
5EL5|1|14|A|1786
5EL5|1|14|A|1787

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain A5
50S ribosomal protein L22
Chain L5
50S ribosomal protein L34

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