HL_5EL5_076

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5EL5|1|14|A|1780, 5EL5|1|14|C|1781, 5EL5|1|14|C|1782, 5EL5|1|14|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0697

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5EL5|1|14|U|1777
5EL5|1|14|U|1778
5EL5|1|14|U|1779
5EL5|1|14|A|1780
5EL5|1|14|C|1781
5EL5|1|14|C|1782
5EL5|1|14|A|1783
5EL5|1|14|A|1784
5EL5|1|14|A|1785
5EL5|1|14|A|1786
5EL5|1|14|A|1787

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34