HL_5EL5_083

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

5EL5|1|14|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_083 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.243

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5EL5|1|14|C|2142
5EL5|1|14|C|2143
5EL5|1|14|U|2144
5EL5|1|14|C|2145
5EL5|1|14|C|2146
5EL5|1|14|G|2147
5EL5|1|14|G|2148
5EL5|1|14|G|2149

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 2A

30S ribosomal protein S11

Chain 3L

Transfer RNA; tRNA