HL_5EL5_208

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GG(5MU)(PSU)CGAAUCC

Length

11 nucleotides

Bulged bases

5EL5|1|1L|C|56, 5EL5|1|1L|G|57

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_208 not in the Motif Atlas

Homologous match to HL_5EL4_223

Geometric discrepancy: 0.4342

The information below is about HL_5EL4_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5EL5|1|1L|G|52
5EL5|1|1L|G|53
5EL5|1|1L|5MU|54
5EL5|1|1L|PSU|55
5EL5|1|1L|C|56
5EL5|1|1L|G|57
5EL5|1|1L|A|58
5EL5|1|1L|A|59
5EL5|1|1L|U|60
5EL5|1|1L|C|61
5EL5|1|1L|C|62

Current chains

Chain 1L

tRNALys

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16