Motif HL_23827.3 Version HL_23827.3 of this group appears in releases 3.90 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	3-6	4-5
1	HL_6DME_003	6DME	0.6271	3	A	ppGpp Riboswitch	G	78	G	79	A	80	U	81	A	84	A	85	A	87	C	88	cWW	cWW	tWH	tWH
2	HL_4WT8_137	4WT8	0.3037	3	C3	tRNA	G	52	G	53	U	54	U	55	A	58	U	60	C	61	C	62	cWW
3	HL_4V7M_040	4V7M	0.0000	3	AY	tRNA	G	51	G	52	U	53	U	54	A	57	U	59	C	60	C	61	cWW
4	HL_4V9I_040	4V9I	0.3642	3	AY	A-SITE tRNA	C	52	A	53	A	54	C	55	U	58	C	60	C	61	G	62	cWW	ncWW
5	HL_5EL4_223	5EL4	0.4035	3	3L	tRNA	G	52	G	53	U	54	U	55	A	58	U	60	C	61	C	62	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUCGAAUCC	2
GGAUAAAAGAC	1
GGUUCGAUUCC	1
CAACUCUACCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUCGAAUC	2
GAUAAAAGA	1
GUUCGAUUC	1
AACUCUACC	1

Release history

Release	3.90	3.91	3.92	3.93	3.94
Date	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-F-F-F-F-F
Heat map statistics: Min 0.30 | Avg 0.41 | Max 0.88

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