Motif HL_23827.3 Version HL_23827.3 of this group appears in releases 3.90 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DME_003 | 6DME | 0.6271 | 3 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 84 | A | 85 | A | 87 | C | 88 | cWW | cWW | tWH | tWH |
| 2 | HL_4WT8_137 | 4WT8 | 0.3037 | 3 | C3 | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 58 | U | 60 | C | 61 | C | 62 | cWW | |||
| 3 | HL_4V7M_040 | 4V7M | 0.0000 | 3 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | A | 57 | U | 59 | C | 60 | C | 61 | cWW | |||
| 4 | HL_4V9I_040 | 4V9I | 0.3642 | 3 | AY | A-SITE tRNA | C | 52 | A | 53 | A | 54 | C | 55 | U | 58 | C | 60 | C | 61 | G | 62 | cWW | ncWW | ||
| 5 | HL_5EL4_223 | 5EL4 | 0.4035 | 3 | 3L | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 58 | U | 60 | C | 61 | C | 62 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAAUCC | 2 |
| GGAUAAAAGAC | 1 |
| GGUUCGAUUCC | 1 |
| CAACUCUACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAAUC | 2 |
| GAUAAAAGA | 1 |
| GUUCGAUUC | 1 |
| AACUCUACC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.30 | Avg 0.41 | Max 0.88
Coloring options: