HL_5EL5_218
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUCAGUUGGUAGAG
- Length
- 14 nucleotides
- Bulged bases
- 5EL5|1|3L|U|16, 5EL5|1|3L|U|17, 5EL5|1|3L|G|18, 5EL5|1|3L|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL5_218 not in the Motif Atlas
- Homologous match to HL_4V90_032
- Geometric discrepancy: 0.4814
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5EL5|1|3L|C|11
5EL5|1|3L|U|12
5EL5|1|3L|C|13
5EL5|1|3L|A|14
5EL5|1|3L|G|15
5EL5|1|3L|U|16
5EL5|1|3L|U|17
5EL5|1|3L|G|18
5EL5|1|3L|G|19
5EL5|1|3L|U|20
5EL5|1|3L|A|21
5EL5|1|3L|G|22
5EL5|1|3L|A|23
5EL5|1|3L|G|24
Current chains
- Chain 3L
- tRNALys
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2A
- 30S ribosomal protein S11
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