HL_5EL5_222

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_222 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2308

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5EL5|1|13|C|1075
5EL5|1|13|C|1076
5EL5|1|13|G|1077
5EL5|1|13|U|1078
5EL5|1|13|G|1079
5EL5|1|13|A|1080
5EL5|1|13|G|1081
5EL5|1|13|G|1082

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 4E

30S ribosomal protein S5