HL_5EL6_003

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGGAAACUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_003 not in the Motif Atlas

Geometric match to HL_1HMH_006

Geometric discrepancy: 0.3626

The information below is about HL_1HMH_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52841.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5EL6|1|13|G|156
5EL6|1|13|G|157
5EL6|1|13|G|158
5EL6|1|13|G|159
5EL6|1|13|A|160
5EL6|1|13|A|161
5EL6|1|13|A|162
5EL6|1|13|C|163
5EL6|1|13|U|164
5EL6|1|13|C|165

Current chains

Chain 13

16S rRNA

Nearby chains

Chain B8

50S ribosomal protein L19

Chain BI

30S ribosomal protein S20