HL_5EL6_116

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

5EL6|1|1G|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_116 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1581

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5EL6|1|1G|G|617
5EL6|1|1G|C|618
5EL6|1|1G|U|619
5EL6|1|1G|C|620
5EL6|1|1G|A|621
5EL6|1|1G|A|622
5EL6|1|1G|C|623

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 7A

30S ribosomal protein S16