HL_5EL7_029
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5EL7|1|13|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL7_029 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0991
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5EL7|1|13|G|1356
5EL7|1|13|A|1357
5EL7|1|13|U|1358
5EL7|1|13|C|1359
5EL7|1|13|A|1360
5EL7|1|13|G|1361
5EL7|1|13|C|1362
5EL7|1|13|C|1362|||A
5EL7|1|13|A|1363
5EL7|1|13|U|1364
5EL7|1|13|G|1365
5EL7|1|13|C|1366
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 1F
- 30S ribosomal protein Thx
- Chain 1I
- 30S ribosomal protein S10
- Chain 2E
- 30S ribosomal protein S3
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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