HL_5EL7_036

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

5EL7|1|14|U|161

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_036 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3397

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5EL7|1|14|C|153
5EL7|1|14|G|154
5EL7|1|14|C|155
5EL7|1|14|U|161
5EL7|1|14|U|162
5EL7|1|14|G|171
5EL7|1|14|C|172
5EL7|1|14|G|173

Current chains

Chain 14

23S rRNA

Nearby chains

Chain F5

50S ribosomal protein L28