HL_5EL7_083

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5EL7|1|14|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_083 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.3545

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5EL7|1|14|C|2209
5EL7|1|14|G|2210
5EL7|1|14|G|2211
5EL7|1|14|A|2212
5EL7|1|14|U|2213
5EL7|1|14|G|2215

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 3E

30S ribosomal protein S4

Chain F5

50S ribosomal protein L28