HL_5EL7_195

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5EL7|1|1H|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_195 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.138

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5EL7|1|1H|U|2528
5EL7|1|1H|G|2529
5EL7|1|1H|A|2530
5EL7|1|1H|A|2531
5EL7|1|1H|G|2532
5EL7|1|1H|A|2533
5EL7|1|1H|A|2534
5EL7|1|1H|G|2535

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 51

50S ribosomal protein L6