HL_5EL7_209
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUCAGUUGGUGAG
- Length
- 13 nucleotides
- Bulged bases
- 5EL7|1|1L|U|16, 5EL7|1|1L|U|17, 5EL7|1|1L|G|18, 5EL7|1|1L|G|19
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL7_209 not in the Motif Atlas
- Homologous match to HL_5E6M_001
- Geometric discrepancy: 0.4674
- The information below is about HL_5E6M_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5EL7|1|1L|C|11
5EL7|1|1L|U|12
5EL7|1|1L|C|13
5EL7|1|1L|A|14
5EL7|1|1L|G|15
5EL7|1|1L|U|16
5EL7|1|1L|U|17
5EL7|1|1L|G|18
5EL7|1|1L|G|19
5EL7|1|1L|U|20
5EL7|1|1L|G|22
5EL7|1|1L|A|23
5EL7|1|1L|G|24
Current chains
- Chain 1L
- tRNALys
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
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