HL_5EL7_228

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_228 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2096

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5EL7|1|1G|G|157
5EL7|1|1G|G|158
5EL7|1|1G|G|159
5EL7|1|1G|A|160
5EL7|1|1G|A|161
5EL7|1|1G|A|162
5EL7|1|1G|C|163
5EL7|1|1G|U|164

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain BA

30S ribosomal protein S20