HL_5F8K_075

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5F8K|1|1a|U|202, 5F8K|1|1a|U|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_075 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.2919

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5F8K|1|1a|C|201
5F8K|1|1a|U|202
5F8K|1|1a|U|203
5F8K|1|1a|U|204
5F8K|1|1a|G|216

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains