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Motif HL_90436.5 Version HL_90436.5 of this group appears in releases 4.10 to 4.10

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 31-3
1 HL_4LFB_0054LFB0.49572Mini UNCGA SSU rRNAC201U203G216cWW
2 HL_4YAZ_0044YAZ0.38942Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
3 HL_5AH5_0075AH50.28972Mini UNCGD tRNAC46|||AC46|||CG46|||EcWW
4 HL_4V9F_0214V9F0.26472Mini UNCG0 LSU rRNAC712U714G716cWW
5 HL_9H3G_0089H3G0.30362A LSU rRNAC130U132G134cWW
6 HL_8X5V_0038X5V0.27043Mini UNCGBRNA (110-mer)U91U94A96cWW
7 HL_4LFB_0184LFB0.28302Mini UNCGA SSU rRNAG838C840C848ncWW
8 HL_6JOO_0026JOO0.25231Mini UNCGBGuide RNAC58C60G61cWW
9 HL_6MSF_0026MSF0.23822Mini UNCGSRNA (10-mer)G6||||P_1C8||||P_1C10||||P_1cWW
10 HL_6MSF_0016MSF0.20482Mini UNCGRRNA (14-mer)G6||||P_1C8||||P_1C10||||P_1cWW
11 HL_8B0X_0988B0X0.13982Mini UNCG (H)b 5S rRNAG86C88C90cWW
12 HL_8DP3_0028DP30.19792Mini UNCGREnterovirus 5' cloverleaf cis-acting replication elementC39U41G43cWW
13 HL_8VMA_0028VMA0.15821Mini UNCGCEnterovirus 5' cloverleaf cis-acting replication elementC37C39G40cWW
14 HL_8VMB_0028VMB0.18021Mini UNCGREnterovirus 5' cloverleaf cis-acting replication elementC37C39G40cWW
15 HL_8B0X_0718B0X0.24091a LSU rRNAC1730C1732G1733cWW
16 HL_5U30_0015U300.14941Mini UNCGBsgRNAU4G6A7cWW
17 HL_9PN5_0399PN50.07182A1 LSU rRNAC1792U1795G1796cWW
18 HL_2F8K_0012F8K0.08581Mini UNCGBRNA (16-mer)U6G8A9cWW
19 HL_9AXU_0379AXU0.000022 LSU rRNAC1833U1836G1837cWW
20 HL_8GLP_0448GLP0.04192L5 LSU rRNAC2738U2741G2742cWW
21 HL_9H3G_0449H3G0.05562A LSU rRNAC1794U1797G1798cWW
22 HL_7D3J_0017D3J0.08162Mini UNCGBRNA (43-MER)C12C15G16cWW
23 HL_6LTU_0016LTU0.08212Mini UNCGBRNA (56-mer)U12C15A16cWW
24 HL_8OI5_0368OI50.089621 LSU rRNAC1788U1791G1792cWW
25 HL_4V9F_0414V9F0.10542Mini UNCG0 LSU rRNAC1651U1654G1655cWW
26 HL_9E6Q_0399E6Q0.10022Mini UNCG (H)1 LSU rRNAC1707U1710G1711cWW
27 HL_7EU9_0017EU90.10772Mini UNCGBRNA (43-MER)C12C15G16cWW
28 HL_7A0S_0177A0S0.13783Mini UNCG with extended bulgeX LSU rRNAC553U557G558cWW
29 HL_5SWD_0055SWD0.17193Mini UNCGBPurine riboswitchU47C50A52cWW
30 HL_8KAL_0028KAL0.15441Mini UNCGA tracrRNAC55A57G58cWW
31 HL_7A0S_0397A0S0.19991Mini UNCGX LSU rRNAC1581A1583G1584cWW
32 HL_8B0X_0678B0X0.18061Mini UNCG (H)a LSU rRNAC1567G1569G1570cWW
33 HL_9DFE_0379DFE0.17191Mini UNCG1A LSU rRNAC1565A1567G1568cWW
34 HL_7QQP_0027QQP0.11821Mini UNCGA tracrRNAC55A57G58cWW
35 HL_7QQX_0027QQX0.11141Mini UNCGA tracrRNAC55A57G58cWW
36 HL_7QR0_0027QR00.11541Mini UNCGA tracrRNAC55A57G58cWW
37 HL_5B2T_0025B2T0.10571Mini UNCGA tracrRNAC55A57G58cWW
38 HL_5FQ5_0025FQ50.12651Mini UNCGA tracrRNAC55A57G58cWW
39 HL_5VW1_0025VW10.13301Mini UNCGC tracrRNAC55A57G58cWW
40 HL_8KAJ_0018KAJ0.16401Mini UNCGI tracrRNAC55A57G58cWW
41 HL_9PN5_0839PN50.28541B5 SSU rRNAC276U278G279cWW
42 HL_4WF9_0374WF90.44731Mini UNCGX LSU rRNAC1612A1614G1615cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG8
CCUUG4
CUUUG2
GUCUC2
CUCG2
GUCAC2
CACG2
CCGUG2
CAUCG2
CAAG2
CCCUG1
CUCUG1
CUUCG1
UUUUUA1
CAUUG1
UAGA1
UUGA1
UUUCA1
CCAUG1
CUUAUG1
UUUCUA1
CAGG1
CUUG1
CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UA8
CUU4
UCU3
UUU2
UUC2
UC2
UCA2
AC2
AG2
CGU2
AUC2
AA2
CCU1
UUUU1
AUU1
UG1
CAU1
UUAU1
UUCU1
UU1
GA1

Release history

Release4.10
Date2026-05-20
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (30)
  • (8)
  • Mini UNCG (H) (3)
  • Mini UNCG with extended bulge (1)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.02 | Avg 0.26 | Max 0.97
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