HL_5F8K_156

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5F8K|1|2A|A|2030, 5F8K|1|2A|A|2031, 5F8K|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_156 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0728

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5F8K|1|2A|G|2027
5F8K|1|2A|U|2028
5F8K|1|2A|G|2029
5F8K|1|2A|A|2030
5F8K|1|2A|A|2031
5F8K|1|2A|G|2032
5F8K|1|2A|A|2033
5F8K|1|2A|U|2034
5F8K|1|2A|G|2035
5F8K|1|2A|C|2036

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3